Hundreds of students and other protesters chanting "shut him down" smashed windows at the University of California campus, set wooden pallets on fire and threw fireworks and rocks as police in full riot gear responded with tear gas.
The university was placed on lockdown as the sold-out appearance by Milo Yiannopoulos, a conservative firebrand, was canceled Wednesday evening.
"If U.C. Berkeley does not allow free speech and practices violence on innocent people with a different point of view - NO FEDERAL FUNDS?" Trump wrote on Twitter Thursday, AFP reported.
Trump's top political adviser Stephen Bannon is the former chairman of Breitbart News.
UC Berkeley is one of the top public universities in the United States. Its operating costs are funded by money from the state of California and tuition fees, as well as grants and government and private contracts.
About half of research at Berkeley is funded by the federal government, according to the university website. Berkeley however has been struggling in the past years with budget shortfalls and spending deficits.
Yiannopoulos, who is the Breitbart technology editor, is known for his provocative social media posts and was banned from Twitter in July for fueling abuse directed at "Ghostbusters" actress Leslie Jones.
The British journalist is a vocal supporter of Donald Trump -- nicknaming the US president "Daddy" during his election campaign -- and has become one of the faces of America's "alt-right" movement.
Similar protests at the University of California at Davis last month also forced the cancellation of speeches by Yiannopoulos and former pharmaceutical executive Martin Shkreli.
The events at Davis and Berkeley were organized by conservative student groups. A similar invitation to speak at UCLA was rescinded and Berkeley was to be the last stop of his tour.
Officials at the three University of California campuses stressed that they did not invite Yiannopoulos or endorse his ideas but were committed to free speech.
More than 100 UC Berkeley faculty members had signed two letters sent last month to the school's chancellor, urging him to cancel the event.